Publications

Primary literature:

• Hays M*, Schwartz K*, Schmidtke DT, Aggeli D, Sherlock G. Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by retrotransposons and microhomology-mediated recombination. PLOS Genetics (2023) 19(5): e1010747

• Hays M, Young JM, Levan P, Malik HS. A natural variant of the essential host gene MMS21 restricts the parasitic 2-micron plasmid in Saccharomyces cerevisiae. eLife 2020;9:e62337 DOI: 10.7554/eLife.62337

• Intosalmi J, Scott AC, Hays M, Flann N, Yli-Harja O, Lähdesmäki H, Dudley AM, Skupin A. Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies. BMC Mol Cell Biol. 2019 Dec 19;20(1):59

• Cromie GA, Tan Z, Hays M, Sirr A, Dudley AM. Spatiotemporal patterns of gene expression during development of a complex colony morphology. PLoS One. 2024 Dec 5;19(12):e0311061.

• Cromie GA, Tan Z, Hays M, Sirr A, Jeffery EW, Dudley AM. Transcriptional Profiling of Biofilm Regulators Identified by an Overexpression Screen in Saccharomyces cerevisiae. G3 (Bethesda). 2017 Aug 7;7(8):2845-2854

• Cromie GA, Tan Z, Hays M, Jeffery EW, Dudley AM. Dissecting Gene Expression Changes Accompanying a Ploidy-Based Phenotypic Switch. G3 (Bethesda). 2017 Jan 5;7(1):233-246.

• Ludlow CL, Cromie GA, Garmendia-Torres C, Sirr A, Hays M, Field C, Jeffery EW, Fay JC, Dudley AM. Independent Origins of Yeast Associated with Coffee and Cacao Fermentation. Curr Biol. 2016 Apr 4;26(7):965-71.

• Tan Z*, Hays M*, Cromie GA, Jeffery EW, Scott AC, Ahyong V, Sirr A, Skupin A, Dudley AM. Aneuploidy underlies a multicellular phenotypic switch. Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12367-72. 

• Ludlow CL*, Scott AC*, Cromie GA, Jeffery EW, Sirr A, May P, Lin J, Gilbert TL, Hays M, Dudley AM. High-throughput tetrad analysis. Nat Methods. 2013 Jul;10(7):671-5.

• Carter GW, Hays M, Sherman A, Galitski T. Use of pleiotropy to model genetic interactions in a population. PLoS Genet. 2012;8(10):e1003010. 

• Carter GW, Hays M, Li S, Galitski T. Predicting the effects of copy-number variation in double and triple mutant combinations. Pac Symp Biocomput. 2012:19-30.